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Publications

Rituximab for children with EBV-positive Burkitt lymphoma in East Africa.

Mawalla WF. et al, (2025), Blood Adv

Multimodal cell-free DNA whole-genome TAPS is sensitive and reveals specific cancer signals.

Vavoulis DV. et al, (2025), Nat Commun, 16

Targeted Next-Generation Sequencing of Cell-Free DNA to Detect MYC-Immunoglobulin Translocation and Epstein-Barr Virus DNA in Plasma of Burkitt Lymphoma Patients in East Africa.

Chamba C. et al, (2025), JCO Glob Oncol, 11

Structural and non-coding variants increase the diagnostic yield of clinical whole genome sequencing for rare diseases.

Pagnamenta AT. et al, (2023), Genome Med, 15

Treatment delays in children and young adults with lymphoma: a report from an East Africa lymphoma cohort study.

Mawalla WF. et al, (2023), Blood Adv, 7, 4962 - 4965

Diagnostic validation of a portable whole slide imaging scanner for lymphoma diagnosis in resource-constrained setting: A cross-sectional study.

Mremi A. et al, (2023), J Pathol Inform, 14

Whole-genome sequencing of chronic lymphocytic leukemia identifies subgroups with distinct biological and clinical features.

Robbe P. et al, (2022), Nat Genet, 54, 1675 - 1689

TET2 Drives 5hmc Marking of GATA6 and Epigenetically Defines Pancreatic Ductal Adenocarcinoma Transcriptional Subtypes.

Eyres M. et al, (2021), Gastroenterology, 161, 653 - 668.e16

Genomic and transcriptomic correlates of Richter transformation in chronic lymphocytic leukemia.

Klintman J. et al, (2021), Blood, 137, 2800 - 2816

A statistical approach for tracking clonal dynamics in cancer using longitudinal next-generation sequencing data.

Vavoulis DV. et al, (2021), Bioinformatics, 37, 147 - 154

Clinical significance of TP53, BIRC3, ATM and MAPK-ERK genes in chronic lymphocytic leukaemia: data from the randomised UK LRF CLL4 trial.

Blakemore SJ. et al, (2020), Leukemia, 34, 1760 - 1774

Comprehensive genomic testing for chronic lymphocytic leukaemia patients: WGS, one key to patient stratification

Ridout K. et al, (2020), LEUKEMIA & LYMPHOMA, 61, 167 - 168

A method for noninvasive prenatal diagnosis of monogenic autosomal recessive disorders.

Cutts A. et al, (2019), Blood, 134, 1190 - 1193

Whole genome sequencing identifies putative associations between genomic polymorphisms and clinical response to the antiepileptic drug levetiracetam

Vavoulis DV. et al, (2019)

ChroniSense National Early Warning Score Study (CHESS): a wearable wrist device to measure vital signs in hospitalised patients-protocol and study design.

Van Velthoven MH. et al, (2019), BMJ Open, 9

Correction: Whole-genome sequencing of chronic lymphocytic leukaemia reveals distinct differences in the mutational landscape between IgHVmut and IgHVunmut subgroups.

Burns A. et al, (2019), Leukemia, 33

Exploring Bayesian approaches to eQTL mapping through probabilistic programming

Vavoulis DV., (2019)

DGEclust: differential expression analysis of clustered count data.

Vavoulis DV. et al, (2015), Genome Biol, 16

Non-parametric Bayesian modelling of digital gene expression data

Vavoulis DV. and Gough J., (2013), J Comput Sci Syst Biol, 7, 001 - 009

A self-organizing state-space-model approach for parameter estimation in hodgkin-huxley-type models of single neurons.

Vavoulis DV. et al, (2012), PLoS Comput Biol, 8